Copenhagen microbiome study shows lower gut bacteria in vegans

Led by researchers comparing 75 vegans and 75 omnivores, the investigation highlights a potential link between lower protein intake and reduced microbial richness in plant-based diets.

In Plain English: The Clinical Takeaway

  • Gut Diversity Matters: A diverse microbiome acts like a healthy ecosystem, helping the body process food, regulate immunity, and maintain metabolic balance.
  • The Protein Connection: Plant-based eaters in the study who consumed higher amounts of protein maintained gut bacteria diversity levels similar to those of omnivores.
  • Metabolic Trade-Offs: Despite lower bacterial diversity, the vegan group showed favorable metabolic markers, including lower blood sugar, reduced cholesterol, and fewer signs of inflammation.

Unpacking the Copenhagen Microbiome Findings

Given that plant-based diets are rich in dietary fiber and plant compounds, researchers initially anticipated a higher degree of microbial biodiversity in the vegan cohort.

Instead, analysis of stool, blood, and urine samples showed that the 75 participants following an exclusively plant-based diet had a lower average number of bacterial species in their gastrointestinal tracts. Oluf Borbye Pedersen, a professor at the Novo Nordisk Foundation Center for Basic Metabolic Research, likened the gut ecosystem to a rainforest, which functions at its best when it hosts numerous different species.

Yet, a lower count of bacterial species did not translate to poor health metrics. The vegan participants demonstrated higher counts of fiber-degrading bacteria, alongside an increased presence of the microorganism Blastocystis, which is associated with lower levels of blood pressure.

Evaluating Protein Intake and Metabolic Markers

Dietary tracking provided a clue regarding the disparity in bacterial diversity. Vegans derived an average of 12 percent of their daily energy from proteins, compared to 17 percent among omnivores. However, when researchers isolated data from vegan participants who maintained a higher protein intake, their intestinal biodiversity matched that of the omnivorous group.

This association suggests that total protein consumption plays a role in shaping microbial ecosystems. At the same time, the vegan group showed differences in several systemic health parameters.

Health Indicator Vegan Cohort (n=75) Omnivore Cohort (n=75)
Average Protein Intake (% of energy) 12% 17%
Microbial Diversity Index Lower average Higher average
Fiber-Degrading Bacteria Higher presence Lower presence
Glycemia & Cholesterol Markers Lower levels Higher levels

These metabolic advantages confirm that single markers—such as microbial richness—cannot independently determine the overall health value of a nutritional framework. The presence of specialized fiber degraders allowed plant-based eaters to process components of their diet despite a narrower range of total species.

Future Directions in Microbiota Research

Oluf Borbye Pedersen did not formulate specific dietary recommendations based on the findings, but emphasized the importance of ensuring adequate protein intake even in exclusively plant-based diets. Recommended protein sources include beans, lentils, hemp seeds, chia seeds, quinoa, almonds, and other nuts.

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Priya Deshmukh - Senior Editor, Health

Priya Deshmukh Senior Editor, Health Deshmukh is a practicing physician and renowned medical journalist, honored for her investigative reporting on public health. She is dedicated to delivering accurate, evidence-based coverage on health, wellness, and medical innovations.

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